edu.ucla.sspace.graph

Interface Fanmod.MotifFilter

All Known Implementing Classes:

Fanmod.FrequencyAndZScoreFilter, Fanmod.FrequencyFilter, Fanmod.ZScoreFilter

Enclosing class:

Fanmod

public static interface Fanmod.MotifFilter

An interface for performing some computation on a subgraph's frequency information to deicide whether its occurrences constitute it being a motif.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	accepts(int actualFrequency, double expectedValue, double standardDeviation) Returns true if the information on the subgraph's frequencies indicate that it is a motif
double	getStatistic(int actualFrequency, double expectedValue, double standardDeviation) Returns the value used by this filter to identify whether a subgraph is a motif, which could be the Z-score, for example.

Method Detail

accepts

boolean accepts(int actualFrequency,
              double expectedValue,
              double standardDeviation)

Returns true if the information on the subgraph's frequencies indicate that it is a motif

getStatistic

double getStatistic(int actualFrequency,
                  double expectedValue,
                  double standardDeviation)

Returns the value used by this filter to identify whether a subgraph is a motif, which could be the Z-score, for example.