edu.ucla.sspace.graph

Class Fanmod.FrequencyFilter

java.lang.Object

edu.ucla.sspace.graph.Fanmod.FrequencyFilter

All Implemented Interfaces:

Fanmod.MotifFilter

Enclosing class:

Fanmod

public static class Fanmod.FrequencyFilter
extends Object
implements Fanmod.MotifFilter

Constructor Summary

Constructors

Constructor and Description
Fanmod.FrequencyFilter(double minFrequency)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	accepts(int actualFrequency, double expectedValue, double standardDeviation) Returns true if the information on the subgraph's frequencies indicate that it is a motif
double	getStatistic(int actualFrequency, double expectedValue, double standardDeviation) Returns the value used by this filter to identify whether a subgraph is a motif, which could be the Z-score, for example.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Fanmod.FrequencyFilter

public Fanmod.FrequencyFilter(double minFrequency)

Method Detail

accepts

public boolean accepts(int actualFrequency,
              double expectedValue,
              double standardDeviation)

Description copied from interface: Fanmod.MotifFilter

Returns true if the information on the subgraph's frequencies indicate that it is a motif

Specified by:

accepts in interface Fanmod.MotifFilter

getStatistic

public double getStatistic(int actualFrequency,
                  double expectedValue,
                  double standardDeviation)

Description copied from interface: Fanmod.MotifFilter

Returns the value used by this filter to identify whether a subgraph is a motif, which could be the Z-score, for example.

Specified by:

getStatistic in interface Fanmod.MotifFilter